PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI01G35930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 33531.4 Da PI: 4.8936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.9e-12 | 131 | 180 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++++ L+ +lP+ a +s K K +i+ A +YI++L+ ORUFI01G35930.1 131 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 180 599***********************88...*******************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 6.54E-5 | 38 | 47 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-14 | 125 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.427 | 127 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-10 | 129 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-9 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-8 | 133 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF101447 | 6.54E-5 | 234 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ 60 STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ 120 AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKGGKNTIVA AAANYIRELE 180 GRKGWLCAQN ELLERTTPKP GAGMVVKVRA ESELGSTVDV FEAVLRRLKA MDELQVTAIQ 240 SWFGAGGMWM DVAVESKISS REVDKAITNA LKELQEIEYS EYSCLQDPMR SGTSFSCQVE 300 SGVLLMS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 136 | 141 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003265 | 0.0 | AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635057.1 | 0.0 | transcription factor BHLH148-like | ||||
TrEMBL | A0A0E0N362 | 0.0 | A0A0E0N362_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G35930.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |