PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G35770.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 245aa MW: 25730 Da PI: 7.8861

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G35770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.6	4.8e-34	38	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r++a+++++yeA+ar+ dPvyG+vg ORUFI01G35770.1 38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRREAARTVCYEAQARIADPVYGSVG 131 7*******************************998555559*********************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ ORUFI01G35770.1 132 TILALQHQVSLLQGQLSVLESQ 153 **************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.638	37	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-38	38	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MHAAQPPGSS KRRGAVERPA SGAGLQAEEA SSAGPGAPCG ACKFLRRRCV PGCVFAPHFS 60 GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRREA ARTVCYEAQA 120 RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH 180 SAASTLNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDEGH RDMNLFSDSV 240 GQRQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-32	31	155	4	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-32	31	155	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242468	0.0	AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630092.1	1e-176	LOB domain-containing protein 20
Swissprot	Q9SRV3	2e-45	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A0E0N326	1e-174	A0A0E0N326_ORYRU; Uncharacterized protein
TrEMBL	Q5N8Y9	1e-174	Q5N8Y9_ORYSJ; Lateral organ boundaries domain protein 18-like
STRING	ORUFI01G35770.1	1e-175	(Oryza rufipogon)
STRING	OS01T0772100-01	1e-175	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-22	LOB domain-containing protein 20