PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G34950.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 815aa    MW: 88429.4 Da    PI: 6.6064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G34950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2095150156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t+eq++++e+lF+++++p++++r++ +k+lgL+ rqVk+WFqNrR++ k
  ORUFI01G34950.1  95 RKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIK 150
                      788999**********************************************9877 PP
2START174.65.9e-553115372206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                      la +a++elv + +++ep+Wv+ +    +++n+de+++ f ++++         ++ea+r++g+v  ++++lv +++d+  +W+  ++    ka
  ORUFI01G34950.1 311 LATRALDELVGMCSSGEPVWVRGVetgrDILNYDEYVRLFRRDHGgsgdqmagWTVEASRECGLVYLDTMQLVHTFMDVD-KWKDLFPtmisKA 403
                      78899*************************************999***********************************.99998888888** PP

                      EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
            START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                      +tle is+       g+lqlm+aelq l+p+vp R+ +f+Ry+++l a++w+ivdvS d+ +     ss vR+ + pSg+lie+  ng++k+tw
  ORUFI01G34950.1 404 ATLEMISNReddgrdGVLQLMYAELQTLTPMVPtRELYFARYCKKLAAERWAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTW 497
                      *******99999***********************************************9999998**************************** PP

                      EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      veh+ ++  ++  l+r +  sg+a+ga++wva+lq qce+
  ORUFI01G34950.1 498 VEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCER 537
                      **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2080153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-2282146IPR009057Homeodomain-like
PROSITE profilePS5007117.60592152IPR001356Homeobox domain
SMARTSM003893.5E-1794156IPR001356Homeobox domain
PfamPF000468.6E-1895150IPR001356Homeobox domain
CDDcd000866.72E-1795150No hitNo description
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PROSITE profilePS5084840.04301540IPR002913START domain
SuperFamilySSF559618.52E-32302537No hitNo description
CDDcd088757.18E-111305536No hitNo description
SMARTSM002341.1E-46310537IPR002913START domain
PfamPF018522.6E-45311537IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4349501IPR023393START-like domain
SuperFamilySSF559615.36E-5559664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MGTNRPRPRT KDFFAAPALS LTLAGVFGRK NGPAASGGDG VEEGDEEVQA AGEAAVEISS  60
ENAGPGCSQS QSGGGSGEDG GHDDDDGEGS NKKRRKNYHR HTAEQIRIME ALFKESPHPD  120
ERQRQQVSKQ LGLSARQVKF WFQNRRTQIK AVQERHENSL LKSELEKLQD EHRAMRELAK  180
KPSRCLNCGV VATSSDAAAA ATAADTREQR LRLENAKLKA EVCMPPPRSR ARPFRCATLQ  240
DTDSGELAML NLFQIERLRG TPGKSAADGV ASPPCSASAG AMQTNSRSPP LHDHDGGFLR  300
HDDDKPRILE LATRALDELV GMCSSGEPVW VRGVETGRDI LNYDEYVRLF RRDHGGSGDQ  360
MAGWTVEASR ECGLVYLDTM QLVHTFMDVD KWKDLFPTMI SKAATLEMIS NREDDGRDGV  420
LQLMYAELQT LTPMVPTREL YFARYCKKLA AERWAIVDVS FDESETGVHA SSAVRCWKNP  480
SGCLIEEQNN GRCKMTWVEH TRCRRCTVAP LYRAVTASGV AFGARRWVAA LQLQCERMVF  540
AVATNVPTRD STGVSTLAGR RSVLKLAHRM TSSLCRTTGG SRDMAWRRAP KGGSGGGGDD  600
DIWLTSRENA GDDPGEPQGL IACAAASTWL PVNPTALLDL LRDESRRPEW DVMLPGKSVQ  660
SRVNLAKGKD RTNCVTAYAA RPEEEEERGG KWVLQDVCTN PCESTIAYAA IDAAALQPVI  720
AGHDSSGVHL LPCGFISVMP DGLESKPAVI TASRRGGEAS GAGSLVTVAF QVPASPSAAA  780
ATLSPDSVEA VTVLVSSTLR NIRKALGCDS CEEEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644459.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A0E0N2R70.0A0A0E0N2R7_ORYRU; Uncharacterized protein
STRINGORUFI01G34950.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein