PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G34460.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 455aa    MW: 48120.9 Da    PI: 7.3462
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G34460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.6e-34137252189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++    +   +  + a++++ +a ++  +   
  ORUFI01G34460.1 137 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 227
                      689**************************************************************6441...3222111111111111111223 PP

              TCP  89 ........................k 89 
                                               
  ORUFI01G34460.1 228 gfgntggamtsaasaagsflphslG 252
                      3455555555444444444444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-31139261IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971140198IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSGFTNKDGR QNLASCFNFR SSPFRLTVGE RELKLEEDKN QLSKGLDPWT SNPTASASTL  60
HYLLQEKERA QQAHEQLQIY QQQQGFGSFL QHRIRQPASR GPGGGGGGGD GGGSSGESTP  120
VEALATAFGA GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP  180
SKAVDWLMRN AKAAIDELPD RAEAPPPPAA ASTEQPEATE QATSTSYGFG NTGGAMTSAA  240
SAAGSFLPHS LGADRVSDSV KSLFPSSSTA SGAASAGHDE YRGSPPDLLS RTTSNQQPQE  300
LCLTLQSNQH QIFSHVSSNH HGMISSAGVP GWPDHSQRMQ AWHAPENSTG DGRGGGNGDG  360
YMFAMPSRQG LDQSQLFSHG EPLQSSGRGW ASARAWLDPL AVAAIHHQPS TMAAGQVGFG  420
HLVGGAGGGG GFMGFLAPAA QRLEGEEEHG SEVIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20145199155Putative transcription factor PCF6
5zkt_B4e-20145199155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032680.0AP003268.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0503C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639296.10.0transcription factor PCF7
SwissprotQ8LT050.0PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A0E0N2L00.0A0A0E0N2L0_ORYRU; Uncharacterized protein
STRINGORUFI01G34460.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-39TCP family protein