PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G32450.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1023aa    MW: 114331 Da    PI: 6.0993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G32450.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.5e-154134723194
                      .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ++s + tl++++g++W v+l  +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f  +v
  ORUFI01G32450.2 413 PSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 472
                      4677889*************..********************************998888..55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.20201.6E-1494251IPR029057Phosphoribosyltransferase-like
SuperFamilySSF532711.02E-1295257IPR029057Phosphoribosyltransferase-like
SMARTSM014002.4E-1397214No hitNo description
PfamPF137931.2E-798211IPR029099Ribose-phosphate pyrophosphokinase, N-terminal domain
Gene3DG3DSA:3.40.50.20204.4E-23252361IPR029057Phosphoribosyltransferase-like
SuperFamilySSF532715.38E-20262363IPR029057Phosphoribosyltransferase-like
CDDcd062233.99E-13268338IPR000836Phosphoribosyltransferase domain
PfamPF001561.1E-9281329IPR000836Phosphoribosyltransferase domain
SMARTSM010191.9E-6374478IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-17396483IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-16413480IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-12413471IPR003340B3 DNA binding domain
CDDcd100171.25E-12419475No hitNo description
PROSITE profilePS5086312.153419478IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009116Biological Processnucleoside metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MATAASASAS ASPAAAFGAK TRRPGPSPSP SPASAFARPS PRASAAGRLH ASLHLGGASA  60
TGSSIVSNAS GIHLAAPVLA PLAVPKMTGA VGAHKNVLLF HCEEMRELAE QVVARNDDIE  120
LRSISWRTFA DGFPNLFISN AHTIRGQHVA FLASFSSPSV IFEQLSIIYA LPKLFISSFT  180
LILPFFPTGT SERMEDEGDV ATAFTLARIL SNIPISRGGP SSLVIFDIHA LQERFYFGDS  240
VLPCFESGIP LLKSRLQELP DSDNVVCNKV REGEQRIVRI KEGDPRGRHV VIVDDLVQSG  300
GTLIECQKVL AEHGAAKVSA YVTHGIFPNK SWEKFQPDNG EGPGHGLSHF WITDSCPLTV  360
NAVDHTLIVE MLSFTHPLSL DAQCDWTIGN EIPQGFLIHI PEVDHSTFDA SLPSSAKGTL  420
QNSEGKTWPV ELEKLDGHVF LTTGWAKFVE DNSLREYEFL LFRYDDNMHF MVLPFGLNAC  480
EKVIRSSGSP QGKLPCDIFC CTKRGRDGDR LTEAANSLTP SHSQVLQRTT QGHELISPQS  540
FPDQHEVCGS KDGLDEHLSL NGPMEDDKAN AIAEVMSILD VDKVTVELFC AMLVFYKWNV  600
DAVAEDFDIC RGKPQIQNLF LKHKLHFQFD IVKRKLRKFF PPDDYCSSPI LESRKCSLEE  660
PKLSNQPLQC DLTTEKCRLV DEHDLCNFSQ KKRRKRGSLF QDSKKVKPAH GEVDLCEEPQ  720
HNQGENEGNL DQVNNKETDE EQIERNAVET SESFTRRGCI ESSPASCEVP ACLRINELSL  780
TWKPAEHVNP LEKVLLDIQR DNFMKTISHV QGIIRNHPSD LLTADVITVV VQKEIFKWNC  840
CLKDRDAQRI VNALLEHARK IKEMHNFNSE MRKEEFSAKL KVHLKWQLKE VETIYTSLEL  900
DYKKATSDDN IAFSMLHDKK KKLHNLQDEI TGLQQSLEMK DEMQKLAHQV AEHESVFQKS  960
LMERLRIKEV MKGYEQTLAE VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI  1020
TFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690694KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0N1W20.0A0A0E0N1W2_ORYRU; Uncharacterized protein
STRINGORUFI01G32450.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.18e-12B3 family protein