PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G32120.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 322aa MW: 35733.6 Da PI: 5.2783

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G32120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.4	1.2e-10	69	165	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 +W++ + aL++a ++ r +r++l++ W evs+ ++ + s +qC+++++ l+k+y+k+ke+++ + +s s++ yfd ORUFI01G32120.1 69 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYFD 162 5********************************9997776444455799*****************998653111111134567888888 PP trihelix 84 qle 86 +++ ORUFI01G32120.1 163 KMQ 165 886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-17	68	167	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDDGAAPAAA AAAELPSPSP SSSGASPSPR SKRRRTDRYA QGFEFAPRPA PATATATAPA 60 PTPARGTPEW SEGSTFALLD AWGDRFVRAG RRSLRADEWL EVSRLAAAAA SRPPGYYSEQ 120 QCRNRIDTLR KKYRKEKERM RLAARRPDRP DRPSPSKWIY FDKMQSLMCP PPLPLQPPVV 180 TRRRDTQPVP RQSWGLDAAE YVLGGCENAG TRDSGSGAEL GEEQPNEAGA GKGEDFELLV 240 ESIRKLGDVY ERVESSKRQH MAEVEWLRRD LQRDLEVRRR EILEKAQAEI ARLTEEDGEE 300 GDLKEGEGDD NKRFGDDGGG EE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003453	0.0	AP003453.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480C01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623327.1	0.0	uncharacterized protein LOC4324693
TrEMBL	A0A0E0N1Q8	0.0	A0A0E0N1Q8_ORYRU; Uncharacterized protein
STRING	ORUFI01G32120.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	9e-26	Trihelix family protein