PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G31210.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 461aa    MW: 49411.1 Da    PI: 9.0532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G31210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13315361455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  ORUFI01G31210.1 315 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 361
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-4142228IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.32E-16310365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-15314365No hitNo description
PfamPF000107.2E-11315361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSWSETDAAL FAAVLGHDAA HHLATTPPHL DAPEGSPSSA ELQARLHDLV ERQGGAWTYG  60
IFWQESRGAG AASGRAARAV LGWGDGHCRD GAGHGEVGAA ERSVARKRVL LRLHALYGGG  120
DEDGADYALR LDRVTGAEMY FLASMYFSFP EGSGGPGRAL ASGRHAWADV DPHPSGSGSA  180
PGWYVRSSLA QSAGLRTVVF LPCKGGVLEL GSVVAIRETP EVLRAIQSAM RAVPAPPEDF  240
MRIFGKDLSP GRPSQPMGCD APWTPRLVVQ TTPVRPAKKE VVKAKPAKPP PPPEAEKRPR  300
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPK ISKMDKASLL SDAIAYIQEL  360
EARLRGDAPV PARADGPAVE VKAMQDEVVL RVTTPLDEHP ISRVFHAMRE SQISVVASDV  420
AVSDDAVTHT LMVRSAGPER LTAETVLAAM SRGVSVTTPS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-26309397283Transcription factor MYC2
5gnj_B6e-26309397283Transcription factor MYC2
5gnj_E6e-26309397283Transcription factor MYC2
5gnj_F6e-26309397283Transcription factor MYC2
5gnj_G6e-26309397283Transcription factor MYC2
5gnj_I6e-26309397283Transcription factor MYC2
5gnj_M6e-26309397283Transcription factor MYC2
5gnj_N6e-26309397283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296304KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0030230.0AP003023.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0684B02.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0transcription factor bHLH13
TrEMBLA0A0E0N1E60.0A0A0E0N1E6_ORYRU; Uncharacterized protein
STRINGORUFI01G31210.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-61bHLH family protein