PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G29490.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 257aa    MW: 28693.9 Da    PI: 10.4733
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G29490.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.32.3e-2265141371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  ORUFI01G29490.2  65 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 141
                      689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3661146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-2463141IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.0E-1866141IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.25E-1766142IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.83E-25146243IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-27148246No hitNo description
SMARTSM011381.0E-18148253IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-19149244IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERGGGGN AAEREEGGAN RNGKKEKTGA  60
QRITGWGLRE FSKIVSKKVE AKGRTTYNEV ADEIFAELKS ITQNGLEFDE KNIRRRVYDA  120
FNVLIAIRVI AKDKKEIKWM GLTNYRYEKI QKLEEVHKEL ITRIKNKKKL LQEIEKQNIT  180
LRNQASQRPA ESVNGILLPF LLIKTSRKAR VEIEISEDSK FARFDFNGAP FTMHDDVSIL  240
EAIRRNNKGR AGLSIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2365142989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-176transcription factor-like protein DPB isoform X2
TrEMBLA0A0E0N0R10.0A0A0E0N0R1_ORYRU; Uncharacterized protein
STRINGORUFI01G29490.11e-174(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-52Transcription factor DP