PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G29490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 285aa MW: 31867.4 Da PI: 10.3405 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 70 | 2.8e-22 | 93 | 169 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr +++ + +k+e+ g++t+neva+e+ +e d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g ORUFI01G29490.1 93 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 169 689*******...99999999**************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.0E-88 | 1 | 282 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 7.5E-36 | 89 | 174 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.6E-24 | 91 | 169 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.13E-16 | 94 | 170 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 7.3E-18 | 94 | 169 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 1.46E-25 | 174 | 271 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.54E-27 | 176 | 274 | No hit | No description |
SMART | SM01138 | 1.0E-18 | 176 | 281 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.5E-19 | 177 | 272 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ 60 KNRGGGGNAA EREEGGANRN GKKEKTGAQR ITGWGLREFS KIVSKKVEAK GRTTYNEVAD 120 EIFAELKSIT QNGLEFDEKN IRRRVYDAFN VLIAIRVIAK DKKEIKWMGL TNYRYEKIQK 180 LEEVHKELIT RIKNKKKLLQ EIEKQNITLR NQASQRPAES VNGILLPFLL IKTSRKARVE 240 IEISEDSKFA RFDFNGAPFT MHDDVSILEA IRRNNKGRAG LSIHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-23 | 93 | 170 | 9 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224529 | 0.0 | AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631684.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
TrEMBL | A0A0E0N0R0 | 0.0 | A0A0E0N0R0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G29490.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-51 | Transcription factor DP |