PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G29060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1872aa MW: 208450 Da PI: 5.3412 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.5 | 2e-17 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k ORUFI01G29060.1 49 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 103 688999***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-16 | 37 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 37 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.904 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-15 | 46 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.80E-13 | 49 | 104 | No hit | No description |
Pfam | PF00046 | 3.5E-15 | 49 | 103 | IPR001356 | Homeobox domain |
SMART | SM00571 | 6.2E-11 | 647 | 706 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 12.747 | 647 | 706 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.4E-12 | 652 | 703 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.6E-15 | 823 | 891 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.0E-9 | 1046 | 1088 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.8E-12 | 1224 | 1296 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1872 aa Download sequence Send to blast |
MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV 60 LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL 120 MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY 180 EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV 240 PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKKKSMV GNLPPVHPHA 300 GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT PGSHLLRGSD 360 EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG QYGISQVAGI 420 ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ DMMKRKREEQ 480 MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR RAEKQRQKEE 540 LRKEKEAARQ KAANERATAR RIAREYMELV EDECLELMEL AAQSKGLPSM LSLDSDTLQQ 600 LDSFRGMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL ASLHQVWKFS 660 ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA 720 GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN 780 EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG 840 LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS 900 EVVLSSAREK IRAFQNVISD SEAEKEANDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP 960 LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKPSLGKP SSANTSSDSP 1020 VRASSEYHEV PPTDAEDKEI DESNQGESWV HGLAEGDYCD LSVEERLNAL VALVSVANEG 1080 NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DVNQENATES 1140 TPTPFHNVDK HNDGNTGVVD NNNNEIIDHN SNAANASYER NGLGQDIAAT PDTLSVQQYA 1200 YADKTRSQLR AYIGHRAEQL FVYRSLPLGQ DRRRNRYWQF STSASPNDPG SGRIFFECRD 1260 GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL 1320 KNGATEMIRA SYRSDFGSPS SNLSGVTSDS AIAYSDSFKI ELGRNDVEKT AISKRADVFI 1380 RWMWRECNDC KLTCAMEYGK KRCSELMHSC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH 1440 ASQCKDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV 1500 KLHSTTSLEE IFQMFTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL 1560 PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL 1620 DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR 1680 RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE 1740 WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID 1800 DDVSEEEDED VEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGG DGVEANADED 1860 EGGSSYSSEY SD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1682 | 1692 | RTRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107129 | 0.0 | AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616412.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
TrEMBL | A0A0E0N0K2 | 0.0 | A0A0E0N0K2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G29060.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |