PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G29010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 337aa    MW: 36467.8 Da    PI: 9.0816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G29010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.1e-33692131128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratk.... 79 
                      lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp ++++ +++ +  +fF++ +k+y+tg+rk+r+++    
  ORUFI01G29010.1  69 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGTFTGvGKDGLirHFFHRPSKAYTTGTRKRRKVHtdeq 161
                      799************.99****998885665443333333665557**********5443324343345******************7444565 PP

              NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ORUFI01G29010.1 162 ggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 213
                      55778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3761232IPR003441NAC domain
PROSITE profilePS5100533.11869232IPR003441NAC domain
PfamPF023655.7E-1570213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQVSQHVN LIKTCPSCGH RAQYEQAAAA  60
ATIQDLPGLP AGVKFDPTDQ ELLEHLEGKA RPDARKLHPL IDEFIPTIEG ENGICYTHPE  120
RLPGTFTGVG KDGLIRHFFH RPSKAYTTGT RKRRKVHTDE QGGETRWHKT GKTRPVFTGG  180
KLKGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGSDEEEK DGELVVSKVF YQTQPRQCGG  240
GSAATAKDLS VDLVAGNNIK ASNAAAEHHH NDGVGGGGHG GNNSSMLKEA AGIVDFYNPA  300
AALIGYSQAA PNNRAAASAH LTMPNFEVHT GGAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0E0N0J70.0A0A0E0N0J7_ORYRU; Uncharacterized protein
STRINGORUFI01G29010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-123NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]