PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G26200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 381aa MW: 39942 Da PI: 7.0634 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.4e-32 | 207 | 264 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ ORUFI01G26200.1 207 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 264 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-34 | 191 | 266 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-29 | 199 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 201 | 266 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 206 | 265 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 207 | 264 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MSSGGGGGGG GGGDRHGPYH QHGHLGRGEG ADYVYSSSDM ESFFFSQPGG VGIGGGGGGV 60 VGAGGADEIM PYSSITDYLQ GLLDPSGLAR HLDVACPSSQ DTAVKQELSV DVTSHDSQGT 120 GGVAGEGVAQ ATPNSSASFS SSDGEAEGGK SSRRCKKGQA KAEEEDDKDE EDGENSKKPN 180 KPKKKAEKRQ RQPRVAFLTK SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTTPKCGVK 240 KRVERSYQDP STVITTYEGQ HTHHSPASLR GGGGGVGIVG GHHHHHLFMP GVHGLPPSHL 300 MPAGFHPELM GLMHHHPAMA AAAANPSMYF PGVAASAPPP PAVAGGGAMP PNDHPPLQQH 360 HFTDYALLQD LFPSTMPSSN P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 199 | 267 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 199 | 267 | 10 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108745 | 0.0 | AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence. | |||
GenBank | AY341856 | 0.0 | AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626307.1 | 0.0 | WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 2e-48 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A0E0MZH7 | 0.0 | A0A0E0MZH7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G26200.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-42 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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