PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G25560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 441aa MW: 48085.5 Da PI: 7.2525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 5.1e-11 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ t tCk+G++CkF H++ ORUFI01G25560.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132 7889********************97 PP | |||||||
2 | zf-CCCH | 40.7 | 3.8e-13 | 157 | 182 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG Ck+G++CkF+H++ ORUFI01G25560.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182 6899********************96 PP | |||||||
3 | zf-CCCH | 21.1 | 5.6e-07 | 196 | 215 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+a+tG Ck+ + CkF+H++ ORUFI01G25560.1 196 FYAKTGKCKFRAMCKFNHPK 215 9*****************96 PP | |||||||
4 | zf-CCCH | 39.9 | 7e-13 | 268 | 293 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++++G Ck+G++C+F+H+ ORUFI01G25560.1 268 PGEVDCPFYMKMGSCKFGSTCRFNHP 293 57899********************9 PP | |||||||
5 | zf-CCCH | 36.2 | 1e-11 | 351 | 372 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+ drCkF+H+ ORUFI01G25560.1 351 VCDFYMKTGFCKFADRCKFHHP 372 7********************8 PP | |||||||
6 | zf-CCCH | 33.9 | 5.3e-11 | 406 | 428 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C f+++tG Ck+G +CkF H+p ORUFI01G25560.1 406 VCAFYMKTGVCKFGMQCKFDHPP 428 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0038 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.615 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-5 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-7 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.23 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 157 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 161 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1 | 192 | 215 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.643 | 196 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 267 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 269 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 271 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 273 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-7 | 345 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-7 | 346 | 373 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 350 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 351 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 401 | 428 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 401 | 429 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 404 | 429 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 405 | 428 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 406 | 426 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR 60 SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC 120 KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQEGEPD CPFFMKTGKC KFGSKCKFNH 180 PKEKVNALAS GNTNDFYAKT GKCKFRAMCK FNHPKDIEIP SSQNEPESAV TVEGETDIGS 240 AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG SCKFGSTCRF NHPDRLVLNF 300 PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP VTYPQRPGAT VCDFYMKTGF 360 CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR REDAVVCAFY MKTGVCKFGM 420 QCKFDHPPPQ EAIAKVSNSG S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111682 | 0.0 | AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence. | |||
GenBank | AK112116 | 0.0 | AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622283.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A0E0MZ99 | 0.0 | A0A0E0MZ99_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G25560.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-134 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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