PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G25330.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 400aa MW: 44036.1 Da PI: 7.2373

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G25330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	20.9	7.1e-07	348	369	2	23
TCR 2 ekkgCnCkkskClkkYCeCfaa 23 + kgC C ks C k+YCeC + ORUFI01G25330.1 348 QVKGCACCKSGCRKLYCECLQV 369 689****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	1.1E-4	38	174	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF07800	6.6E-64	54	209	IPR012866	Protein of unknown function DUF1644

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MPKDRSTRAV SYERRRSRVS PYPSNGKGCA RRSEESAAAA AAAAAAAKQA AEWEDVRCPV 60 CMDHPHNAVL LVCSSHEKGC RPFMCDTSYR HSNCFDQYRK ASKESSKDSG ASAAAAPECS 120 ECQQPIKLSC PLCRGPVSHW TKDYDARKYL NVKVRACTKE SCEFRGAYGQ LRRHARENHP 180 TVRPTQVDPE RQRDWHRMEQ QRDLGDLFSM LRSGLSARED GIGVSEGEED ISERALHSPS 240 ITMVFIVRTG RSILHYREAF PGHHRRRTIL LLGEAFGRES SPLGGASGSG DGDTTAREND 300 EGDDDATLST EALAGSQHDG EVDGIQLSLL LPPFLELQIL MVASVRNQVK GCACCKSGCR 360 KLYCECLQVT DTDIQRFDDN GDSSGTSGYS SGTIMGQYKL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MPKDRSTRAV SYERRRSRVS PYPSNGKGCA RRSEESAAAA AAAAAAAKQA AEWEDVRCPV  60
CMDHPHNAVL LVCSSHEKGC RPFMCDTSYR HSNCFDQYRK ASKESSKDSG ASAAAAPECS  120
ECQQPIKLSC PLCRGPVSHW TKDYDARKYL NVKVRACTKE SCEFRGAYGQ LRRHARENHP  180
TVRPTQVDPE RQRDWHRMEQ QRDLGDLFSM LRSGLSARED GIGVSEGEED ISERALHSPS  240
ITMVFIVRTG RSILHYREAF PGHHRRRTIL LLGEAFGRES SPLGGASGSG DGDTTAREND  300
EGDDDATLST EALAGSQHDG EVDGIQLSLL LPPFLELQIL MVASVRNQVK GCACCKSGCR  360
KLYCECLQVT DTDIQRFDDN GDSSGTSGYS SGTIMGQYKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841649	0.0	CT841649.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104K23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617030.1	0.0	uncharacterized protein LOC4325319
TrEMBL	A0A0E0MZ71	0.0	A0A0E0MZ71_ORYRU; Uncharacterized protein
STRING	ORUFI01G25330.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8095	2	2