PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G22920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 454aa    MW: 46819.5 Da    PI: 5.3617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G22920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13267312555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  ORUFI01G22920.1 267 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 312
                      7789*********************9.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-16261329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12267315No hitNo description
Gene3DG3DSA:4.10.280.108.8E-16267329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG  60
GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAMSTL AVPHPYPPPV AHGMFASGAG GGGGGGAVDD HEDAIMRAMM AVISSASASP  180
SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQHPRGGNG GHVVVKSSSS SGGLAVPMDQ  240
KPGGGGRGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV  300
LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAADAAM RARRAQQRAK VQISKAADSQ  360
SQQLVSLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI  420
VGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275ERKRRE
2271276RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.10.0putative transcription factor bHLH041
TrEMBLA0A0E0MYD10.0A0A0E0MYD1_ORYRU; Uncharacterized protein
STRINGORUFI01G22920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-22bHLH family protein