PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G22710.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 537aa MW: 57468.9 Da PI: 7.8661

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G22710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H ORUFI01G22710.1 94 FVCEICGKGFQRDQNLQLHRRGH 116 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.58E-7	93	116	No hit	No description
SMART	SM00355	0.012	94	116	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-5	94	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	136	166	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.58E-7	166	191	No hit	No description
SMART	SM00355	160	171	191	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MFHHHLQQQQ QQEEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTVPP PPPPSSGNNG 60 NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW 120 KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY 180 AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP 240 GHHHHHHHHH HQLLFSPPPV MAHHQELAAL QEQQQQQHHQ DVMQSPHQHQ QQQQQRQQLV 300 QQNCGYAVKP EMAPWPTTMP YDHHHPLLQP LCNANAAATA QSSATSAPPT TPQLPAAAAA 360 AHLSATALLQ KAAQMGATIG GAGTGAAGAH YAHMASPAGA GEPAGGSATF GLGLSCLNTH 420 QDGGGGGGNG LIPAGMMGHL ARTASHGRSG EDVAGAGGGG GDGMTRDFLG LRAFSHRDIL 480 LAGFDSSCMG HVNAAAGMAG YEPPPPHHGQ PQHQHQQQQQ QQQGGSNEPW HGMGSHS

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MFHHHLQQQQ QQEEEEGGGL FLVEEAAEAA DQQQESSMSN LTSSASTVPP PPPPSSGNNG  60
NNSNKRKRSL PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSKEA VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY  180
AVHSDWKAHS KICGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGIPAAMAAP  240
GHHHHHHHHH HQLLFSPPPV MAHHQELAAL QEQQQQQHHQ DVMQSPHQHQ QQQQQRQQLV  300
QQNCGYAVKP EMAPWPTTMP YDHHHPLLQP LCNANAAATA QSSATSAPPT TPQLPAAAAA  360
AHLSATALLQ KAAQMGATIG GAGTGAAGAH YAHMASPAGA GEPAGGSATF GLGLSCLNTH  420
QDGGGGGGNG LIPAGMMGHL ARTASHGRSG EDVAGAGGGG GDGMTRDFLG LRAFSHRDIL  480
LAGFDSSCMG HVNAAAGMAG YEPPPPHHGQ PQHQHQQQQQ QQQGGSNEPW HGMGSHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	167	228	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	167	228	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	133	KLKQRGSKEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289209	0.0	AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622202.1	0.0	protein indeterminate-domain 7
Swissprot	Q9ZWA6	1e-114	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A0E0MYA6	0.0	A0A0E0MYA6_ORYRU; Uncharacterized protein
STRING	ORUFI01G22710.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	6e-92	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]