PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G22700.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 784aa MW: 84611.8 Da PI: 6.0348

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G22700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	460	482	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H ORUFI01G22700.1 460 KSKPCTHYAR-GSCLKGDDCPYDH 482 6789****.*********** PP
2	zf-CCCH	30.9	4.6e-10	488	509	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ ORUFI01G22700.1 488 PCHNFMENGMCIRGDKCKFSHV 509 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.967	429	456	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.079	430	455	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	430	454	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-4	457	483	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-5	458	484	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.187	458	485	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	460	483	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	486	510	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	487	510	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	488	511	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-7	488	509	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	488	508	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP 60 DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP 120 DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD 180 DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDVMMNNLS GLIDDASACV MSAQSCGVSG 240 DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS 300 ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR 360 AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR 420 LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY 480 DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS 540 RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP 600 ADGKKLGKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV 660 PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA 720 YNSKSQFLIF ISLQQQEANS AAKGSMPVCI HQLVLSMFLN KDLNWKVGVY LFVWDYENAK 780 RHMT

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDVMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS  300
ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR  360
AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR  420
LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY  480
DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS  540
RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP  600
ADGKKLGKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV  660
PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA  720
YNSKSQFLIF ISLQQQEANS AAKGSMPVCI HQLVLSMFLN KDLNWKVGVY LFVWDYENAK  780
RHMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0E0MYA5	0.0	A0A0E0MYA5_ORYRU; Uncharacterized protein
STRING	ORUFI01G22700.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	2e-06	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]