PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G22620.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 295aa MW: 31930.8 Da PI: 4.3907

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G22620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.4	3.9e-32	22	121	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a+ ORUFI01G22620.1 22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAD 115 6*********9877**************************************************************************** PP DUF260 94 lallke 99 la+l+ ORUFI01G22620.1 116 LAVLQG 121 *99876 PP
2	DUF260	79.9	4.3e-25	129	204	17	91
DUF260 17 vlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++ ORUFI01G22620.1 129 ALAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 204 69****9978**********************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.823	21	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-28	22	120	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	10.326	114	214	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-18	129	204	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG 60 MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ 120 GQDQDQPPAL APYFPAGQPP AQFGNVHRLF RLNNVLRMME ETRREERDDL MAAIVYEADA 180 WARDPRYGVA GVVRSLTNEL ARVRLDEIAF HLLGTDETYD GYKEEDALAV DPVSGAQAGI 240 GVLGGSGADL QENTGILLGA DEPGPGELAV DPIKDVFDID RLLAVDDDLS SGTQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-19	23	116	12	104	LOB family transfactor Ramosa2.1
5ly0_B	8e-19	23	116	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CT834991	0.0	CT834991.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043H23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638289.1	1e-112	uncharacterized protein LOC107278430
Refseq	XP_025882396.1	1e-112	uncharacterized protein LOC107278430
TrEMBL	A0A0E0MY84	0.0	A0A0E0MY84_ORYRU; Uncharacterized protein
STRING	ORUFI01G22620.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23188	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	1e-21	LBD family protein