PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G22390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 443aa    MW: 44571.9 Da    PI: 4.9859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G22390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07337377954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  ORUFI01G22390.1 337 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 377
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13332388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-11334382No hitNo description
Gene3DG3DSA:4.10.280.101.1E-10337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-5338377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTMLE RLVLDEALAA  60
AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ  120
RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG  180
IGNDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA  240
ADMSSQDNPL CSLLASNPAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN  300
CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPTVAARQR RERISERLRV LQKLVPGGAK  360
MDTASMLDEA ANYLRFLKSQ IRELQTLDRR NYPNAAMSIN TAAATTMATS SSPTYNNSNA  420
AMPAFAFPET LGCGGGGGVE QLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031410.0AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032960.0AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0E0MY600.0A0A0E0MY60_ORYRU; Uncharacterized protein
STRINGORUFI01G22390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-21bHLH family protein