PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G21210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 38499.7 Da PI: 6.07 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + + ++G g+W+++++ g+ R++k+c++rw +yl ORUFI01G21210.1 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ ORUFI01G21210.1 70 RGSFSQQEEELIISLHKILGNR-WSQIAAQLP-GRTDNEIKNFWNS 113 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 9 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.845 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.88E-12 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.139 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-11 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRESAAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW 60 INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIAAQLP GRTDNEIKNF WNSCLKKKLR 120 QRGIDPATHK PLNDGGAGAG EEHHDDGDKQ QLMDDVDDCF AIGGGGSSDS LAPPHSPAVS 180 FDPLSVTNVP TTMMQSSSSP YGAAGGEHSS FRSDTLCDYG GSGGGVDVVS DAGTYSAYTG 240 DSSSNSNSTA WTCGSVVVGG AGELPPPPLL PHMDMFGRVD AEPPPYPPFD VQARFSPWHH 300 HHHHHHEPTL PTPPQRLDGG GGAAASFPIR SLSRDMPESC FDLGRGALDD EFGVDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 119 | 3 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004231 | 0.0 | AP004231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0026J14. | |||
GenBank | AP004232 | 0.0 | AP004232.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643158.1 | 0.0 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 6e-73 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0E0MXS0 | 0.0 | A0A0E0MXS0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZU62 | 0.0 | A2ZU62_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G21210.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-75 | myb domain protein 86 |