PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI01G14540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 547aa MW: 57857.6 Da PI: 6.8209 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.1 | 7.6e-21 | 105 | 225 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt+ +v++Li+++ +++++ + +kk++W++vs++m+e g +sp+qC++k+++lnkr ORUFI01G14540.1 105 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKR 198 69999999999998855555443222233444455555555556666666666666666*********************************** PP trihelix 61 ykkikegekkr.tsessstcpyfdqle 86 yk++ + +++ +++++++++++d ++ ORUFI01G14540.1 199 YKRVVDLLGRGkACKVVENHALLDAMD 225 *********9967************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.4E-17 | 103 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 547 aa Download sequence Send to blast |
MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY 60 SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSVGCP WTRMKWTDGM VRLLINVVYS 120 VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG 180 HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS 240 SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGVEATACF HHPPPASMAA ASSAARQAAA 300 AAPSLGMKDS SAGPEDDEDD SEDVPSSNEV DDEDDDDDDD DDEVGPGMKS RRIYGGHRVH 360 HHHHHHNGHH KRRRGDDVSS AGAGDDDDED GVKRARGAAS AAGGGDDEGP SAVQQLQSEL 420 AAAVAGGGDP QQVRQWVRRR TVEVEEQQVA HEVRAYHLER QRLKWERFRA NKERDMERAR 480 LRNDRLRIDG RRMLLLLRQK DLDFDIAEAN SSSVDHLTSS APPPLAALQQ QQQPLGSSPS 540 TAGGHPN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003414 | 0.0 | AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04. | |||
GenBank | AP003921 | 0.0 | AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880854.1 | 0.0 | sarcoplasmic reticulum histidine-rich calcium-binding protein | ||||
TrEMBL | A0A0E0MVG5 | 0.0 | A0A0E0MVG5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q94D75 | 0.0 | Q94D75_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G14540.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11944 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-43 | sequence-specific DNA binding transcription factors |