 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORUFI01G13250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 379aa MW: 40740 Da PI: 6.6533 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORUFI01G13250.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 22.2 | 2.5e-07 | 180 | 222 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR r+ ++++ L l+P++ +K + a++ A+eYI++L
ORUFI01G13250.1 180 KKEKQRRLRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 222
57*********************9.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MYHPQCELLM PLESLEMDVG QSHLAAAVAA AMPGELNFHL LHSLDAAAAA ASSTAASASS 60
QPTVDYFFGG ADQQPPPPAA VQYDQLAAPH HHQTVAMLRD YYGGHYPPPA AAAAATEAYF 120
RGGPRTAGSS SLVFGPADDE SAFMVGPFES SPTPRSGGGR KRSRATAGFH GGGPANGVEK 180
KEKQRRLRLT EKYNALMLLI PNRTKEDRAT VISDAIEYIQ ELGRTVEELT LLVEKKRRRR 240
EMQGDVVDAA TSSVVAGMDQ AAESSEGEVM AAAAMGAVTP PPRQAPIRST YIQRRSKETF 300
VDVRIVEDDV NIKLTKRRRD GCLAAASRAL DDLRLDLVHL SGGKIGDCHI YMFNTKIHPG 360
SPVFASAVAS RLIEVVDEY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 158 | 164 | GRKRSRA |
| 2 | 234 | 239 | KKRRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK106850 | 0.0 | AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence. |
