PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G13060.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 572aa    MW: 59176.3 Da    PI: 7.9741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G13060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30285343259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  ORUFI01G13060.1 285 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 343
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-33269345IPR003657WRKY domain
SuperFamilySSF1182901.96E-27277345IPR003657WRKY domain
PROSITE profilePS5081129.31279345IPR003657WRKY domain
SMARTSM007746.8E-36284344IPR003657WRKY domain
PfamPF031065.0E-26286343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE ETGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NKEATTAAVD VELRRVVEEN  120
RRLRGMLDEL NRSYSALYHQ YLQVTQQQNH RHPDHHLIMN NNNNRPSLAQ THRTAATTTA  180
TTQQFLEPRA SSTAQATADA DMAASDDEAG RGGGDGDASS PSLSNAAGGG GGGGNKMRRV  240
GGQDETAAAA PARENGEQQA AAAAELPCRK PRVSVRARSE APMISDGCQW RKYGQKMAKG  300
NPCPRAYYRC TMAIGCPVRK QVQRCAEDKT VLITTYEGNH NHQLPPAATT MANTTSAAAA  360
MLLSGPAASR DGAAAALLGH HHHHHPAAMF HQSFPYASTM ATLSASAPFP TITLDLTQTP  420
AGGAGAASLL HALHRPPVIH PGAAAQAMPF AVPPQLAMYL PQQRAAAAGL GGAGAARQPS  480
VMETVTAALA ADPNFTTALA AAISSVVAGG AHHQALSTTP RGSAAGAGDG NGNGSSAAAV  540
ATGAASPAAT AEAPAASGSP PRLATQSCTT SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22275345877Probable WRKY transcription factor 4
2lex_A2e-22275345877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0E0MUX40.0A0A0E0MUX4_ORYRU; Uncharacterized protein
STRINGORUFI01G13060.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.19e-55WRKY family protein