PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G12840.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 590aa    MW: 61851.4 Da    PI: 7.8929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G12840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-14349401455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++  + +    +Ka++L +A+eY+k Lq
  ORUFI01G12840.1 349 VHNLSERRRRDRINEKMRALQELIPNCNkACYVLQIDKASMLDEAIEYLKTLQ 401
                      5*************************653667777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-19342409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-16342405No hitNo description
SuperFamilySSF474592.49E-19343410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.168345400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-12349401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-15351406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MPGSRESPTA TTSPSCCGRT ARRWCTGGRS TRRGGKNPPQ PPSPPFGFFG GTGGGGGGSS  60
SRAQERQPGG IDAFAKVGGG FGALGMAPAV HDFASGFGAT TQDNGDDDTV PWIHYPIIDD  120
EDAAAPAALA AADYGSDFFS ELPPAAPPTD LASLPASNHN GATNNRNAPV ATTTTREPSK  180
ESHGGLSVPT TRAEPQPQPQ LAAAKLPRSS GSGGGEGVMN FSLFSRPAVL ARATLESAQR  240
TQGTDNKASN VTASNRVEST VVQTASGPRS APAFADQRAA RKAPEATVAT SSVCSGNGAG  300
SDELWRQQKR KCQAQAECSA SQDDDLDDEP GVLRKSGTRS TKRSRTAEVH NLSERRRRDR  360
INEKMRALQE LIPNCNKACY VLQIDKASML DEAIEYLKTL QLQVQMMSMG TGLCIPPMLL  420
PTAMQHLQIP PMAHFPHLGM GLGYGMGVFD MSNTGALQMP PMPGAHFPCP MIPGASPQGL  480
GIPGTSTMPM FGVPGQTIPS SASSVPPFAS LAGLPVRPSG VPQVSGAMAN MVQDQQQGIA  540
NQQQQCLNKE AIQGANPGDS QMQIIMQNVP VLKRSMAEEF HVRPTNNFQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353358ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0E0MUV10.0A0A0E0MUV1_ORYRU; Uncharacterized protein
STRINGORUFI01G12840.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]