PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G12420.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 302aa MW: 33601.9 Da PI: 9.3492 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.8 | 2.4e-08 | 43 | 69 | 3 | 29 |
XXCHHHCHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeie 29 + k rr+++NReAAr+sR+RKka+ ORUFI01G12420.3 43 DQKTLRRLAQNREAARKSRLRKKAKAY 69 56889******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-5 | 36 | 76 | No hit | No description |
Pfam | PF07716 | 7.0E-5 | 42 | 69 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 48 | 63 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.2E-34 | 100 | 175 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS 60 RLRKKAKAYT TRTRIATSSS AGALAFDMEY ARWLEEHNRQ INELRSAVNA HAGDNELRGV 120 VDKIMSHYEE IFKQKGNAAK ADVFHVLSGM WKTPAERCFL WLGGFRPSEL LKLLSTQLEP 180 LTEQQLSGIA NLQQSSQQAE DALSQGMEAL QQSLAETLAG SLGSSGSTGN VANYMGQMAM 240 AMGKLGTLEN FLRQADNLRQ QTLQQMQRIL TTRQSARALL VISDYSSRLR ALSSLWLARP 300 KE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB051296 | 0.0 | AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds. | |||
GenBank | AK242743 | 0.0 | AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence. | |||
GenBank | HM991168 | 0.0 | HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds. | |||
GenBank | KM096571 | 0.0 | KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621703.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_015621704.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_025880532.1 | 0.0 | transcription factor TGA2.3 | ||||
Swissprot | Q0JNL3 | 0.0 | TGA23_ORYSJ; Transcription factor TGA2.3 | ||||
TrEMBL | A0A0E0FK56 | 0.0 | A0A0E0FK56_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MUP8 | 0.0 | A0A0E0MUP8_ORYRU; Uncharacterized protein | ||||
STRING | OS01T0279900-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-106 | bZIP family protein |
Publications ? help Back to Top | |||
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