PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G12420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 336aa MW: 37605.2 Da PI: 7.7946 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 43 | 85 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L ORUFI01G12420.1 43 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85 56889*************************9877777766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.1E-9 | 35 | 89 | No hit | No description |
SMART | SM00338 | 1.0E-4 | 41 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 43 | 87 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-7 | 44 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.02E-7 | 45 | 92 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 48 | 63 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.1E-34 | 134 | 209 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS 60 RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QAYGNFSQGI FISSSVDQTH SMSGNGALAF 120 DMEYARWLEE HNRQINELRS AVNAHAGDNE LRGVVDKIMS HYEEIFKQKG NAAKADVFHV 180 LSGMWKTPAE RCFLWLGGFR PSELLKLLST QLEPLTEQQL SGIANLQQSS QQAEDALSQG 240 MEALQQSLAE TLAGSLGSSG STGNVANYMG QMAMAMGKLG TLENFLRQAD NLRQQTLQQM 300 QRILTTRQSA RALLVISDYS SRLRALSSLW LARPKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB051296 | 0.0 | AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds. | |||
GenBank | AK242743 | 0.0 | AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence. | |||
GenBank | HM991168 | 0.0 | HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds. | |||
GenBank | KM096571 | 0.0 | KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621703.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_015621704.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_025880532.1 | 0.0 | transcription factor TGA2.3 | ||||
Swissprot | Q0JNL3 | 0.0 | TGA23_ORYSJ; Transcription factor TGA2.3 | ||||
TrEMBL | A0A0E0FK58 | 0.0 | A0A0E0FK58_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MUP6 | 0.0 | A0A0E0MUP6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G12420.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA01G13810.4 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.5 | 1e-142 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
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