PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G12200.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 540aa MW: 58003.2 Da PI: 8.4907

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G12200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.7e-38	160	220	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s ORUFI01G12200.1 160 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 220 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	157	217	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-31	162	218	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	164	218	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	166	202	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MAMGLAALSS FGGRWLRSGR MRRRRRSFGG VAAALGGGGW LAAAALGGGG QRAGGWRVVV 60 VVGGGEDENE RRGWIGNRPR QIGIEVMPNL GNGVKTNNDL PLVSDKLLIV KGIPFCPNNS 120 KKNDLQGISR PDGRIEIDSM TEDVKTEPDG SVPEKILKKP DKILPCPRCN SMETKFCYFN 180 NYNVHQPRHF CRNCQRYWTA GGAMRNVPVG AGRRRNKHVS KYCQAMMTCN NTVAPGDVSD 240 VVHHQVITHG SSLLPATLKE NETPTEFISE VPPCKSSASI LDIGEPNDTD LVPLASGDNK 300 EEKSCASSVV VSSCSENLMP DNAIMKEPNN RSGCCNGVAL PFPTGPALVL PWSLGWNSVA 360 LMPATQCSMQ PVLGLKDGIP CPPSWPPQLM VPAPGICTPV VPIPLVPPLW SCFPGWPNGM 420 WNAQCPGGNT TVLPSTAPNK ISCSGSSSLV LGKHSREESL QEEEKTRNNL WVPKTLRIDD 480 PAEAAKSSIW ATLGIKPDDK GIFKSFQPNV AKNGTAPESP QALQANPAAF SRSQSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MAMGLAALSS FGGRWLRSGR MRRRRRSFGG VAAALGGGGW LAAAALGGGG QRAGGWRVVV  60
VVGGGEDENE RRGWIGNRPR QIGIEVMPNL GNGVKTNNDL PLVSDKLLIV KGIPFCPNNS  120
KKNDLQGISR PDGRIEIDSM TEDVKTEPDG SVPEKILKKP DKILPCPRCN SMETKFCYFN  180
NYNVHQPRHF CRNCQRYWTA GGAMRNVPVG AGRRRNKHVS KYCQAMMTCN NTVAPGDVSD  240
VVHHQVITHG SSLLPATLKE NETPTEFISE VPPCKSSASI LDIGEPNDTD LVPLASGDNK  300
EEKSCASSVV VSSCSENLMP DNAIMKEPNN RSGCCNGVAL PFPTGPALVL PWSLGWNSVA  360
LMPATQCSMQ PVLGLKDGIP CPPSWPPQLM VPAPGICTPV VPIPLVPPLW SCFPGWPNGM  420
WNAQCPGGNT TVLPSTAPNK ISCSGSSSLV LGKHSREESL QEEEKTRNNL WVPKTLRIDD  480
PAEAAKSSIW ATLGIKPDDK GIFKSFQPNV AKNGTAPESP QALQANPAAF SRSQSFQETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0MUM1	0.0	A0A0E0MUM1_ORYRU; Uncharacterized protein
STRING	ORUFI01G12200.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-61	cycling DOF factor 2