PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G11230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 555aa MW: 60282.1 Da PI: 4.7165 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.2 | 9.8e-40 | 168 | 227 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s ORUFI01G11230.1 168 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 227 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 165 | 225 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 170 | 226 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 172 | 226 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 174 | 210 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPEAAAAAA AAAAAEVEPA AQDEDHHKET 60 EERKYDEMKV DVPQEEEDNE MKVDAPQEKK DNEVTADVPE EKGNDEMRVD ASESIESIEP 120 VSRSTLDNKK EDQGQMNNVE EKAASDSKDE NEKTANDESG QDKVLKKPDK ILPCPRCNSM 180 DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKSKSSSLH YRHLLMAPDC 240 MMGSRVEISK SMNPEAFASA HSTPIQPIGR NETVLKFGPE VPLCESMASV LNIQEQNGTN 300 AAAVPTGENQ EDNSCISSIT SHNVLPENAA QVDKNSTPVY CNGVGPVPQY YLGAPYMYPW 360 NIGWNNVPMM VPGTSMPESA SQSESCSTSS APWMNMNSPM MPVASRLSAP PFPYPLVPPA 420 LWGCLSSWPA MAWNIPWIRT NGGCMSPSSS SNSSCSGNGS PLGKHSRDSS LPLKEDKEEK 480 SLWVPKTLRI DDPDEAAKSS IWATLGIKPG DPGIFKPFQS KGESKGQAAS ETRPARALKA 540 NPAALSRSQS FQETS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001383 | 0.0 | AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618265.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A0E0MUA2 | 0.0 | A0A0E0MUA2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G11230.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 7e-70 | cycling DOF factor 2 |