PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G10410.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26415.8 Da PI: 9.525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 69 | 90 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ ORUFI01G10410.4 69 CQHFVRTGTCKFGDSCRYFHPK 90 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 9.2E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 7.03E-14 | 4 | 46 | No hit | No description |
Pfam | PF06220 | 2.0E-9 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 1.1E-4 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-6 | 67 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 68 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-6 | 68 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLLHQ 60 PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP SGNILGGHTS WGNLPPSLRP 120 PPEGGYPPFP FIVCIQAAWR STPGHRRHET SHRSSSTSLS EKKPHRRGIA GCFEQDLSAS 180 SAASLAPLTS CLSSTSTPSS KQQREESHWL LLARQLPMAV WNDAQGGATY SELLSCLFRG 240 FR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071420 | 1e-170 | AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610914.1 | 5e-73 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 4e-74 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0E0MU08 | 1e-177 | A0A0E0MU08_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G10410.2 | 1e-142 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-23 | C3H family protein |
Publications ? help Back to Top | |||
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