PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G10410.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 274aa MW: 29612.2 Da PI: 9.312

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G10410.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.8e-09	69	90	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ ORUFI01G10410.2 69 CQHFVRTGTCKFGDSCRYFHPK 90 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	9.2E-4	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	1.22E-13	4	46	No hit	No description
Pfam	PF06220	2.4E-9	5	37	IPR013085	Zinc finger, U1-C type
SMART	SM00356	1.1E-4	65	90	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-6	67	90	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-6	68	88	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	68	91	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	68	90	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLLHQ 60 PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP SGPVSGPMAQ QSNIQGSQPN 120 FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFIVCIQAA WRSTPGHRRH 180 ETSHRSSSTS LSEKKPHRRG IAGCFEQDLS ASSAASLAPL TSCLSSTSTP SSKQQREESH 240 WLLLARQLPM AVWNDAQGGA TYSELLSCLF RGFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071420	0.0	AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610914.1	1e-117	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	1e-118	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A0E0MU06	0.0	A0A0E0MU06_ORYRU; Uncharacterized protein
STRING	ORUFI01G10410.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	9e-25	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]