PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 534aa    MW: 55986.6 Da    PI: 6.5477
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27210264156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++
  ORUFI01G09620.1 210 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 264
                      5689*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.104207266IPR017930Myb domain
SuperFamilySSF466896.09E-18208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26208267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26210264IPR006447Myb domain, plants
PfamPF002492.4E-7213262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG  120
AAAAADYDGS PPPPRGKKKK DDEERSSSLP EEKDAKNGGS DEVLSAVTTE DSSAGAAKSC  180
SPSAEGHSKR KPSSSSSSVA AGKNSHGKRK VKVDWTPELH RRFVQAVEQL GIDKAVPSRI  240
LELMGIECLT RHNIASHLQK YRSHRKHLMA REAEAASWTQ KRQMYTAAAA AAAVAAGGGP  300
RKDAAAATAA VAPWVMPTIG FPPPHAAAMV PPPPHPPPFC RPPLHVWGHP TAGVEPTTAA  360
APPPPSPHAQ PPLLPVWPRH LAPPPPPLPA AWAHGHQPAP VDPAAYWQQQ YNAARKWGPQ  420
AVTPGTPCMP PPLPPAAMLQ RFPVPPVPGM VPHPMYRPIP PPSPPQGNKL AALQLQLDAH  480
PSKESIDAAI GDVLVKPWLP LPLGLKPPSL DSVMSELHKQ GIPKVPPAAS GAAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-15215266657Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RGKKKKD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340420.0CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340440.0CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.10.0probable transcription factor GLK2 isoform X1
SwissprotQ5NAN50.0GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0E0MTQ30.0A0A0E0MTQ3_ORYRU; Uncharacterized protein
STRINGORUFI01G09620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-44GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]