PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09450.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 637aa    MW: 70695.7 Da    PI: 5.9988
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.6e-2260160198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+ltpsd++++g +++ +++a+e+       +     +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    ++
  ORUFI01G09450.1  60 FCKILTPSDTSTHGGFSVLRRHANEClppldmsMAT--PTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYL--RS 149
                      99****************************974333..3458999******************************************999..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++e +v+v+r
  ORUFI01G09450.1 150 ETGEQRVGVRR 160
                      77778999997 PP
2Auxin_resp97.12.6e-32186267183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+s+F v+Y+Pr s+s+++v+v+k+++a kv + vGmRfkm+fe+ed++ +++sGt+vg  d  +++W++S+W+sLk
  ORUFI01G09450.1 186 ASHAIKTNSIFLVYYRPRLSQSQYIVSVNKYLAASKVGFNVGMRFKMSFEGEDVPVKKFSGTIVGEGD-LSLQWSGSEWKSLK 267
                      789*****************************************************************.566*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-3751189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-3652175IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-1658160No hitNo description
PROSITE profilePS5086311.13860162IPR003340B3 DNA binding domain
PfamPF023628.5E-2060160IPR003340B3 DNA binding domain
SMARTSM010191.1E-1660162IPR003340B3 DNA binding domain
PfamPF065076.3E-29186267IPR010525Auxin response factor
PfamPF023093.4E-7519570IPR033389AUX/IAA domain
SuperFamilySSF542772.4E-9529606No hitNo description
PROSITE profilePS5174525.447533622IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.4E-4535598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MFQVPYKILC KVVNVELKAE TETDEVFAQI TLQPDPDQEN LPTLPDPPLP EQPRPVVHSF  60
CKILTPSDTS THGGFSVLRR HANECLPPLD MSMATPTQEL ITKDLHGSEW RFKHIYRGQP  120
RRHLLTTGWS TFVTSKKLIS GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL  180
GVLASASHAI KTNSIFLVYY RPRLSQSQYI VSVNKYLAAS KVGFNVGMRF KMSFEGEDVP  240
VKKFSGTIVG EGDLSLQWSG SEWKSLKVQW DEVTNVNGPE RVSPWEIETC DGTAPAINVP  300
LQSATKNKRP REPSETIDLQ SLEPAQEFWL SGMPQQHEKT GIGSSEPNCI SGHQVVWPGE  360
HPGYGAASSS VCQNPLVLES WLKDFNSSNK GVSPTLSEIS QKIFQVTSNE ARIATWPARS  420
AYQAEEPTSK LSSNTAACGY RTEEVAPNAS KVVEGKKEPA MFRLFGVDLM KCTSISTTTD  480
DKSSVGAGEA SAKGTGSHED SGQLSAFSKV TKEHIAADES PQEIQSHQNY TARTRIKVQM  540
HGNAVGRAVD LANLDGYEQL MNELEEMFNI KDLKQKWKVA FTDDEGDTME VGDDPWLEFC  600
QMVRKIVLYP IEDEKKIEPH PKLLSSANPE QDQKTGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-132228867353Auxin response factor 1
4ldw_A1e-132228867353Auxin response factor 1
4ldw_B1e-132228867353Auxin response factor 1
4ldx_A1e-132228867353Auxin response factor 1
4ldx_B1e-132228867353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713000.0AB071300.1 Oryza sativa OsARF16 mRNA for auxin response factor 16, partial cds.
GenBankAK1025210.0AK102521.1 Oryza sativa Japonica Group cDNA clone:J033095P08, full insert sequence.
GenBankEU8470080.0EU847008.1 Oryza sativa Japonica Group clone KCS385B05 auxin response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622434.10.0auxin response factor 1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0E0MTN40.0A0A0E0MTN4_ORYRU; Auxin response factor
STRINGORUFI01G09450.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.31e-164auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]