PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09250.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 445aa    MW: 49960.9 Da    PI: 7.0456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09250.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.6e-15109188186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l++
  ORUFI01G09250.2 109 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVH 188
                      899********************999433..5679***************..888888..9**********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-17103188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20104187IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-24107191No hitNo description
SMARTSM010192.5E-12109201IPR003340B3 DNA binding domain
PfamPF023626.8E-14109188IPR003340B3 DNA binding domain
PROSITE profilePS5086310.193109213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEQKMELVHQ RLALLDSSSG SDRDDDIGPR MLMPKEVENE QRTVPGIPQT CNTQNTSNGR  60
TNTTEVPVKG QNKCASYLPK KSSVQAFCGS AMKRAQEIQT KLPAEHPSFV KHMLHSHVVS  120
GFWLGLPAGF CNKYLPKHDT DIVLEDENGN NHNTNYLGGK QGLSAGWRGF AINHDIKVGD  180
VVVFELVHII RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA  240
HDDTQNLVHE AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA  300
QKSFLHRHLL RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM  360
NVAFLLKRVD DLLGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID  420
AEMEEMESSV RNHDIALRKI ATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0E0MTK70.0A0A0E0MTK7_ORYRU; Uncharacterized protein
STRINGORUFI01G09250.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-31B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]