PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09250.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 467aa    MW: 52407.8 Da    PI: 8.1196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15131210186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l++
  ORUFI01G09250.1 131 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVH 210
                      899********************999433..5679***************..888888..9**********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-17125209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20126209IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-24129213No hitNo description
SMARTSM010192.5E-12131223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.193131235IPR003340B3 DNA binding domain
PfamPF023627.3E-14131210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRMLMPKEVE  60
NEQRTVPGIP QTCNTQNTSN GRTNTTEVPV KGQNKCASYL PKKSSVQAFC GSAMKRAQEI  120
QTKLPAEHPS FVKHMLHSHV VSGFWLGLPA GFCNKYLPKH DTDIVLEDEN GNNHNTNYLG  180
GKQGLSAGWR GFAINHDIKV GDVVVFELVH IIRDKNISPT DRAPGLKSFY ACKKRKISKE  240
ATDNATKPKE DPETTRVSSK VAHDDTQNLV HEAIDGIRFS DSEMSFDDVM SYSNFNIVVD  300
GLVIDCKFPD HQRRTYYELC CAQKSFLHRH LLRQLSLTLV VGVIMETINI AEGIRACGAG  360
TSSQEDFLIW KKTLQSFDLL GMNVAFLLKR VDDLLGLPEQ PRDPSECSKY NELKLERSRA  420
GEKVKALESM MLTVKDVLKK IDAEMEEMES SVRNHDIALR KIATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0E0MTK70.0A0A0E0MTK7_ORYRU; Uncharacterized protein
STRINGORUFI01G09250.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-31B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]