PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G06940.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92215.8 Da    PI: 6.8582
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G06940.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ORUFI01G06940.4 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START58.71.9e-19179275297
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++l
  ORUFI01G06940.4 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGanGTIEL 271
                      789*******************************************************.8888888888******************9955554 PP

                      EEEX CS
            START  94 mvae 97 
                       +++
  ORUFI01G06940.4 272 LYMQ 275
                      4433 PP
3START87.23.6e-2830041197204
                      XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
            START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                      +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R e+lpSg+li+p++ g+s +++v+h+dl+ +++++++r+l++
  ORUFI01G06940.4 300 QLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRDEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLYE 393
                      789***************************************999999********************************************** PP

                      HHHHHHHHHHHHHTXXXX CS
            START 187 sglaegaktwvatlqrqc 204
                      s+++ ++k+ +a+l++++
  ORUFI01G06940.4 394 SSAMVAQKISMAALRYLR 411
                      **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
PfamPF000462.2E-161270IPR001356Homeobox domain
CDDcd000863.81E-161272No hitNo description
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.15E-664103No hitNo description
PROSITE profilePS5084822.521169413IPR002913START domain
SuperFamilySSF559611.25E-29170266No hitNo description
CDDcd088751.81E-66173412No hitNo description
Gene3DG3DSA:3.30.530.205.3E-15176388IPR023393START-like domain
SMARTSM002344.0E-31178413IPR002913START domain
PfamPF018521.1E-16179275IPR002913START domain
SuperFamilySSF559611.25E-29296392No hitNo description
PfamPF018522.7E-25300411IPR002913START domain
PfamPF086701.6E-49702847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHHQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RDEMLPSGFL  360
IRPSDVGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQVAHEDTRS  420
VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVIES DGVDDVCISV NSSKVIGCNA  480
TFSSGLPIVS TGVLCAKASM LLQDVSPPSL LQFLREHRSQ WADSNLDAFF ASTMKPNFCN  540
LPMSRLGGFS GQVILPLAHT FEPEEFLEVI KLGNASNYQD TLVHRDLFLL QDTSSPNCTL  600
DLASTLEAAT PRSRISGVNG GGGGCAAAAA SSSSKAVMTI AFQFAFDGHL QDSVAAMARQ  660
YMRNIISSVQ RIAVALSSSR LVPPGAGAAA AQLSPVTPEA ATLPRWICQS YRFHFGAELI  720
KSVDANSSNE SILKAVWHHP SAILCCSLKT MPVFTFANQS GLDMLETTLV ALQDMTLEKV  780
FDDQGRKNLC TELPNIMEQG MACMEGGVCV SSVGRAASYE KAVAWKVVDG DGGGAHCICF  840
MFINWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0MSQ60.0A0A0E0MSQ6_ORYRU; Uncharacterized protein
STRINGORUFI01G06940.30.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein