PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G06940.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92119.8 Da    PI: 7.241
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G06940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  ORUFI01G06940.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START129.15.4e-411793682202
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  ORUFI01G06940.2 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R e+lpSg+li+p++ g+s +++v+h+dl+ +++++++r+l+
  ORUFI01G06940.2 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRDEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLY 351
                      .799***************************************999999********************************************* PP

                      HHHHHHHHHHHHHHTXX CS
            START 186 ksglaegaktwvatlqr 202
                      +s+++ ++k+ +a ++ 
  ORUFI01G06940.2 352 ESSAMVAQKISMALCKI 368
                      ************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
PfamPF000462.2E-161270IPR001356Homeobox domain
CDDcd000863.81E-161272No hitNo description
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.15E-664103No hitNo description
PROSITE profilePS5084816.909169354IPR002913START domain
SuperFamilySSF559611.19E-28170351No hitNo description
Gene3DG3DSA:3.30.530.201.9E-13176347IPR023393START-like domain
SMARTSM002344.8E-29178372IPR002913START domain
PfamPF018521.3E-38179367IPR002913START domain
PfamPF086701.6E-49702847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHHQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP  300
SMPLVQPFIR DEMLPSGFLI RPSDVGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK  360
ISMALCKIQA LRYLRQVAHE DTRSVITGWG RQPAALRALS QKLTRGFNEA LNGLADDGWS  420
VIESDGVDDV CISVNSSKVI GCNATFSSGL PIVSTGVLCA KASMLLQDVS PPSLLQFLRE  480
HRSQWADSNL DAFFASTMKP NFCNLPMSRL GGFSGQVILP LAHTFEPEEF LEVIKLGNAS  540
NYQDTLVHRD LFLLQMYNGV EESSAGTCMF RASSLRPSTH RSVMIPHCCL PDTSSPNCTL  600
DLASTLEAAT PRSRISGVNG GGGGCAAAAA SSSSKAVMTI AFQFAFDGHL QDSVAAMARQ  660
YMRNIISSVQ RIAVALSSSR LVPPGAGAAA AQLSPVTPEA ATLPRWICQS YRFHFGAELI  720
KSVDANSSNE SILKAVWHHP SAILCCSLKT MPVFTFANQS GLDMLETTLV ALQDMTLEKV  780
FDDQGRKNLC TELPNIMEQG MACMEGGVCV SSVGRAASYE KAVAWKVVDG DGGGAHCICF  840
MFINWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0MSQ40.0A0A0E0MSQ4_ORYRU; Uncharacterized protein
STRINGORUFI01G06940.30.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein