PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G06940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 91534 Da PI: 7.1458 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ ORUFI01G06940.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 132.3 | 5.7e-42 | 179 | 370 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ ORUFI01G06940.1 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R e+lpSg+li+p++ g+s +++v+h+dl+ +++++++r+l+ ORUFI01G06940.1 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRDEMLPSGFLIRPSDVGGSVIHIVDHMDLEPWSVPEVVRPLY 351 .799***************************************999999********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+++ ++k+ +a+l++++ ORUFI01G06940.1 352 ESSAMVAQKISMAALRYLR 370 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 12 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-16 | 12 | 72 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.12E-6 | 64 | 103 | No hit | No description |
PROSITE profile | PS50848 | 17.939 | 169 | 372 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.73E-29 | 170 | 351 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-13 | 176 | 347 | IPR023393 | START-like domain |
SMART | SM00234 | 3.0E-31 | 178 | 372 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-39 | 179 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 1.6E-49 | 697 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM 120 RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHHQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP 300 SMPLVQPFIR DEMLPSGFLI RPSDVGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK 360 ISMAALRYLR QVAHEDTRSV ITGWGRQPAA LRALSQKLTR GFNEALNGLA DDGWSVIESD 420 GVDDVCISVN SSKVIGCNAT FSSGLPIVST GVLCAKASML LQDVSPPSLL QFLREHRSQW 480 ADSNLDAFFA STMKPNFCNL PMSRLGGFSG QVILPLAHTF EPEEFLEVIK LGNASNYQDT 540 LVHRDLFLLQ MYNGVEESSA GTCMFRASSL RPSTHRSVMI PHCCLPDTSS PNCTLDLAST 600 LEAATPRSRI SGVNGGGGGC AAAAASSSSK AVMTIAFQFA FDGHLQDSVA AMARQYMRNI 660 ISSVQRIAVA LSSSRLVPPG AGAAAAQLSP VTPEAATLPR WICQSYRFHF GAELIKSVDA 720 NSSNESILKA VWHHPSAILC CSLKTMPVFT FANQSGLDML ETTLVALQDM TLEKVFDDQG 780 RKNLCTELPN IMEQGMACME GGVCVSSVGR AASYEKAVAW KVVDGDGGGA HCICFMFINW 840 TFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0E0MSQ3 | 0.0 | A0A0E0MSQ3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G06940.3 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |