PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G06710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 473aa MW: 49877.9 Da PI: 6.982 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 289 | 334 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +K +iL +A eY+ksL+ ORUFI01G06710.1 289 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 334 8899********************95.....4999**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.284 | 284 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-16 | 286 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.34E-13 | 286 | 338 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 287 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 289 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 3.58E-4 | 325 | 353 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.9E-4 | 333 | 352 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQASLICNL 60 FDQETMHKIK EILGFNLVGV AFYYGMQISM QMGMDDESAV YDGASMVDDL LMASSSPHHH 120 AGAGSFQYSS PTSSSASFRS ASVSCSPESS AAATTHFLGP PAPSAAAAGF HYPEVSSQAP 180 LPLPLPPYEP QHGQYTTVLS PPPPAPELPA TTTPATGGAF RRYARHLRPR RLPKPGGCGQ 240 RMFKTAMSVL TKMHVAATYN RQYYYQQAAA AAESASAAEA PPSGNQLQHM ISERKRREKL 300 NDSFLALKAV LPPGSKKDKT SILIRAREYV KSLESKLSEL EEKNRELEAR LASRPAAAAK 360 NDKGETAAAP APEAGDETKR KDLVEIEVTT SGGGAGAADA AAAAGGDQET CTLNVDLRGG 420 GGGGGMSTTD VVLRTLQCLR EQIGDGASLV AMSTSAGSGG RPPRANLTLQ LKV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 292 | 297 | ERKRRE |
2 | 293 | 298 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102964 | 0.0 | AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626911.1 | 0.0 | uncharacterized protein LOC4327325 | ||||
TrEMBL | A0A0E0MSM0 | 0.0 | A0A0E0MSM0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G06710.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 5e-16 | bHLH family protein |