PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G06700.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 550aa    MW: 58494.4 Da    PI: 7.1364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G06700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13250296455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +Ka+iL +A e+I+sL+
  ORUFI01G06700.1 250 QHTMSERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIRSLE 296
                      599***********************6.....499***************96 PP
2HLH24.64.4e-08448499355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC.HHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsK.aeiLekAveYIksLq 55 
                      + h + Er+RR+++N +f  L++     +   p+ Kl+K ++iL  A eY+k L+
  ORUFI01G06700.1 448 MQHTMSERKRREKLNGSFVALQSRPYVlP---PGSKLDKtSSILIGAREYMKFLE 499
                      579*******************9855534...8999666489**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.73E-14244300No hitNo description
SuperFamilySSF474597.2E-17244314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.142246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16250313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-11250296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-14252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-10443503No hitNo description
Gene3DG3DSA:4.10.280.103.3E-12444516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.207445498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-13446518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5448499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5451504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSCGSWEFE QREQQFISSQ IQHRLNEASL  60
IAAISMHLSM DDDDDQSAVY GAAMVDDLLT PSPSTHHAVA AAAGSFPSSS SSSASFRSAS  120
VSYSPDTSSS AAAAAATGFY PELSSQVAPL LPPPPLVRNE PQPGRYTAGL PPPPPPPVTG  180
GAFRRYARHL GPRRAPKPGA CGQRMFKTAM SALAKMHMET TYRRRQYYYQ QAAAAAEAAP  240
PPPSGNNQLQ HTMSERKRRE KLNDSFVALK AVLPTGSKKD KASILIRARE HIRSLESKLS  300
ELEEKNRELE ARLVSSPAAK NDKGETAAAE AGDETKREDL VEIEVTTTSG GSGVADAAAT  360
GGDQETCCTL NVDLRGGGGG GGMSTTDVVL RTLQCLREQI GDGASLVAMS TSAGSGGRPP  420
SANLTLQLKI SMSLSMDDVT MISPRNQMQH TMSERKRREK LNGSFVALQS RPYVLPPGSK  480
LDKTSSILIG AREYMKFLES KLSELEEKNR ELEARLVSSP AVVAKNDEEE AAAPPEAGGE  540
VKRERIGSSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453458ERKRRE
2454459RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879409.11e-147uncharacterized protein LOC107280684 isoform X2
TrEMBLA0A0E0MSL90.0A0A0E0MSL9_ORYRU; Uncharacterized protein
STRINGORUFI01G06700.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-15bHLH family protein