PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G06650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 515aa MW: 55090.7 Da PI: 8.8982 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3e-06 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H ORUFI01G06650.1 74 YVCEICGKGFQRDQNLQLHRRGH 96 9********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.97E-8 | 73 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0069 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-6 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 44 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 139 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.97E-8 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV 60 IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE 120 AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC 180 DCGTLFSRRL SWPPPPPPPW PSSEVLMIGL RCGCRRDSFI THRAFCDALA EESARAVTAA 240 AAVAGQQQHG GGMLFSQVAD VLDHQAAMAM GGHGLMQELC LKREQQQQQQ QFAPSWLTAQ 300 QQQQQLEEEK RYGGGSGRGS RFRSGGDEFI GSSTPESGGA QQAGLSFGFS STSSAPPHPA 360 ASSAHMSATA LLQKAAQMGA TLSRPSSHAH MAAAAAASTH NSSSSAATTN APPPPPTSNV 420 SSTCVGAGGY GLAFEASHFI AADESSRGAR SDRDTGNGVA GAGNDGLTRD FLGLRAFSHG 480 NIMSMAGFDP CMSTTSASSA APYDHHHHSN KPWHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-28 | 147 | 235 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-28 | 147 | 235 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 113 | KLKQRNPKEVVRKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002537 | 0.0 | AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06. | |||
GenBank | AP003417 | 0.0 | AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622491.1 | 0.0 | protein indeterminate-domain 7 | ||||
TrEMBL | A0A0E0MSL4 | 0.0 | A0A0E0MSL4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G06650.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-98 | indeterminate(ID)-domain 7 |