PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G06650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 515aa    MW: 55090.7 Da    PI: 8.8982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G06650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-067496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cgk F r  nL+ H r H
  ORUFI01G06650.1 74 YVCEICGKGFQRDQNLQLHRRGH 96
                     9********************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.97E-87396No hitNo description
PROSITE profilePS5015711.8017496IPR007087Zinc finger, C2H2
SMARTSM003550.00697496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035544116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-4139171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.97E-8146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC  180
DCGTLFSRRL SWPPPPPPPW PSSEVLMIGL RCGCRRDSFI THRAFCDALA EESARAVTAA  240
AAVAGQQQHG GGMLFSQVAD VLDHQAAMAM GGHGLMQELC LKREQQQQQQ QFAPSWLTAQ  300
QQQQQLEEEK RYGGGSGRGS RFRSGGDEFI GSSTPESGGA QQAGLSFGFS STSSAPPHPA  360
ASSAHMSATA LLQKAAQMGA TLSRPSSHAH MAAAAAASTH NSSSSAATTN APPPPPTSNV  420
SSTCVGAGGY GLAFEASHFI AADESSRGAR SDRDTGNGVA GAGNDGLTRD FLGLRAFSHG  480
NIMSMAGFDP CMSTTSASSA APYDHHHHSN KPWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-28147235364Zinc finger protein JACKDAW
5b3h_F4e-28147235364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025370.0AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0E0MSL40.0A0A0E0MSL4_ORYRU; Uncharacterized protein
STRINGORUFI01G06650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-98indeterminate(ID)-domain 7