PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G05760.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 329aa    MW: 34682.9 Da    PI: 10.7465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G05760.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.5e-10203223121
                      ---SS-EEEEEEE--TT-SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                      ldDgy+WrKYGqK+vk++++p
  ORUFI01G05760.3 203 LDDGYKWRKYGQKVVKNTQHP 223
                      59****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-12188223IPR003657WRKY domain
SuperFamilySSF1182909.68E-9195224IPR003657WRKY domain
PROSITE profilePS5081112.277198241IPR003657WRKY domain
SMARTSM007748.7E-4203248IPR003657WRKY domain
PfamPF031062.9E-6204223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSH  60
HHHHHGVLGY SPLVLDHHHP TTAAASSHAP SPPTLHHHHG GGLHAAAPPP RSSPPHPWSC  120
EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG  180
GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPSPLNRRN VPYGALLNSY  240
GMPHFMPSPS THASHLPPRG QLVASVDACG PSDADRIFPL RSTARETRSR ENINSSDLMD  300
LSAIAIAHCI STKQPNHKVG ASRERKKER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087550.0AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632233.11e-159probable WRKY transcription factor 13 isoform X2
TrEMBLA0A0E0MSA30.0A0A0E0MSA3_ORYRU; Uncharacterized protein
STRINGORUFI01G05760.30.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-17WRKY DNA-binding protein 13