PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G04670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 277aa MW: 28543.2 Da PI: 6.7631 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.5 | 2.8e-44 | 30 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el ORUFI01G04670.1 30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKEL 123 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e ORUFI01G04670.1 124 DTAHAE 129 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.427 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MASSSSTSNS AISSVVASAV ATTTPGAGSP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA 60 NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ 120 KELDTAHAEL LRYACGEVGI PTALPVTAAP RLAAAMPAPG QLAAAVSAGM YGGGRRLGVI 180 DGGGIAPPSP HTAGCYYARN NNAGSIGADV APVLPYASVA NWTVNAISTT TTNSGSESIG 240 MDHKEGGDSS ICGDLRFGLD ERGSERLQED GSPFIPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-83 | 21 | 149 | 2 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-83 | 21 | 149 | 2 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200238 | 0.0 | AB200238.1 Oryza sativa Japonica Group CRLL4 mRNA for LOB domain protein, complete cds. | |||
GenBank | AK105527 | 0.0 | AK105527.1 Oryza sativa Japonica Group cDNA clone:001-127-G05, full insert sequence. | |||
GenBank | AP002912 | 0.0 | AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10. | |||
GenBank | AP003339 | 0.0 | AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648006.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_025878847.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A0E0MRW8 | 0.0 | A0A0E0MRW8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G04670.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 7e-67 | LBD family protein |