PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G02660.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 319aa    MW: 35538.7 Da    PI: 6.7322
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G02660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-1367115155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  ORUFI01G02660.1  67 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 115
                      78****9888.8*********......44*************************98 PP
2B391.27.9e-29180273185
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++
  ORUFI01G02660.1 180 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 273
                      89*****************************999855667999************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-1667121IPR016177DNA-binding domain
PfamPF008472.7E-867115IPR001471AP2/ERF domain
CDDcd000182.14E-1367121No hitNo description
Gene3DG3DSA:3.30.730.103.9E-1968121IPR001471AP2/ERF domain
SMARTSM003809.2E-2468129IPR001471AP2/ERF domain
PROSITE profilePS5103221.07468123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-37176294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29177289IPR015300DNA-binding pseudobarrel domain
CDDcd100174.12E-28178273No hitNo description
PROSITE profilePS5086313.394180289IPR003340B3 DNA binding domain
PfamPF023627.8E-26180274IPR003340B3 DNA binding domain
SMARTSM010197.1E-20180290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEEELAAM EEDELIHVVQ AAELRLPSST  60
TATRPSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRFRGRDAVT  120
NRAPAAEGAS AGELAFLAAH SKAEVVDMLR KHTYDDELQQ GLRRGSRAQP TPRWAREPLF  180
EKAVTPSDVG KLNRLVVPKQ QAERHFPFPL RRHSSDAAGK GVLLNFEDGD GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVREK GLRPGDTVAF SRSAAAWGTE KHLLIDCKKM ERNNLATVDD  300
DAHVVVMLFG VDIAGDKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817729511122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029130.0AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0E0MR540.0A0A0E0MR54_ORYRU; Uncharacterized protein
STRINGORUFI01G02660.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-96related to ABI3/VP1 2