PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G00170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 428aa    MW: 47066.1 Da    PI: 4.668
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G00170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC85.55.8e-2721121198
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie+++df +h++P+ar+kki  +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +df
  ORUFI01G00170.1  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDF 114
                      68899*765566********************************************************************************** PP

            NF-YC  92 lvdivpr 98 
                      lvdi  +
  ORUFI01G00170.1 115 LVDILHN 121
                      ***9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001251.4E-824106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.08E-1544120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-1845119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH  120
NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFTNNN IPDNIIGCSS  240
PAVLASMMSS ALLDVAGASL NPPNSHSICT MNMINSSDPS GSSIGDINVA NQASIAPSEH  300
FNPAILQESS CPSFLYNNNN DTIVVVPEGV DISGTMDVAS DVAGLVINGQ EEEHERKTNA  360
EQNEIYESID IGIINASVAD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL  420
YEDHSSVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-1831119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422260.0AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence.
GenBankAP0029690.0AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04.
GenBankAP0036100.0AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09.
GenBankAP0037270.0AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622453.10.0uncharacterized protein LOC4326467 isoform X3
TrEMBLA0A0E0MQ930.0A0A0E0MQ93_ORYRU; Uncharacterized protein
STRINGORUFI01G00170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-22nuclear factor Y, subunit C4