PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.8.497.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Dof
Protein Properties Length: 715aa    MW: 75801 Da    PI: 9.3702
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.8.497.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof86.52.5e-27454510561
       zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  +++c+rC s++t+fCyynn  ++qPryfC++C+ryWt+GGa rn+  G+grrk++k+
  gw1.8.497.1 454 HRSCARCGSDETRFCYYNNGLTAQPRYFCRSCQRYWTEGGAQRNLTKGSGRRKDNKH 510
                  578**************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.6E-27128250No hitNo description
SuperFamilySSF521721.2E-24129249IPR011006CheY-like superfamily
SMARTSM004481.5E-18130248IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.671131252IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-15132247IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.33E-19133244No hitNo description
PROSITE profilePS5088423.049455509IPR003851Zinc finger, Dof-type
PfamPF027014.0E-23455509IPR003851Zinc finger, Dof-type
PROSITE patternPS013610457493IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-16457507IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
GTSPTAREVA GAYDAARFGF EPLRDGAAKA SPTPRSGGRG ARGATTLPTN RVGALVRAFG  60
AHVRATETDI LKKCERLVDP TSVGFFELSK ARLGMLRDEG RLAAETDVSG EDARENRRTT  120
RTSAKKGAKK SVLIVDDVAC VRKFHAGQIG RLGYQSIEAG EGTEALRLYG ENHAGIQGIL  180
LDLMMPVMDG YSTANEIRAL EEKQDLRRMP IIAVTSLTDQ EMKANSKSTA FDGHVDKPTS  240
MSKLATIFES MRMVPDVSPL DMRSIVASKD AETAPHGLKR LHRSKTTSSS NITSDKNDSK  300
NGSNEGSEEK CQRGSDSNGD ARSSGDSGNN LTRLDGLDNS AKRPNDRGTN SKEYVAGDGS  360
NDGSSDASRQ GSAHDSEEKS TMDKTANQNR SQKANAAHVK AQAAPVNIPS PDSEAPIGKG  420
GNAPVPAPTK TDPKSKDDPK AKDATKKTAA DHVHRSCARC GSDETRFCYY NNGLTAQPRY  480
FCRSCQRYWT EGGAQRNLTK GSGRRKDNKH APRTDSQAGT GKDANRDLRG APGTFATGSQ  540
AQNEMQRAIM VLMTQVVGFD VDHAANNAGM VASRAGEEVA HNVLQELGHS SEAIEMAMSL  600
AKTTGWRIGI SVSAVATAAV SQGMNQSEIA SLISTQLPFL ANTLVREVTD YIKSLRTSRK  660
SPSGESNDSG GSGGTAENGG KSSTSAQSNA TATGVRSVPS GVLSQLQALQ TQLMQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419332.10.0predicted protein
TrEMBLA4S1A90.0A4S1A9_OSTLU; Uncharacterized protein
STRINGABO976250.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1304633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.11e-19Dof family protein