PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.7.1039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YB | ||||||||
Protein Properties | Length: 106aa MW: 11802.5 Da PI: 6.7644 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 38.7 | 2.4e-12 | 1 | 104 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPa....nak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 d++lP a v r++k l + +ak i k+a ec+ fi ++t+ a+d c+ kr i+++d+l a+ + f + v+ ++ l+ + gw1.7.1039.1 1 DEELPRAHVKRLVKAKLCSldnvDAKgqsfepnIQKEALIAYGECAKIFIHYLTATANDVCRDHKRSIISAEDVLAAIDECDFPELVDDVRGTLSAF 97 5678888888888877754222222222333338888888999************************************************999999 PP NF-YB 91 relegek 97 + ++++k gw1.7.1039.1 98 QSAKRKK 104 9888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.1E-25 | 1 | 105 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.0E-19 | 2 | 105 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.1E-9 | 3 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
DEELPRAHVK RLVKAKLCSL DNVDAKGQSF EPNIQKEALI AYGECAKIFI HYLTATANDV 60 CRDHKRSIIS AEDVLAAIDE CDFPELVDDV RGTLSAFQSA KRKKKA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418976.1 | 7e-60 | predicted protein | ||||
TrEMBL | A4S0I1 | 1e-58 | A4S0I1_OSTLU; Uncharacterized protein | ||||
STRING | ABO97269 | 3e-59 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 5e-24 | nuclear factor Y, subunit B11 |