PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | gw1.4.1217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 63aa MW: 7668.79 Da PI: 9.9488 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.2 | 3e-32 | 8 | 63 | 2 | 57 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 ++ +++cprC+s++tkfCyynny+++qPr++C+ C ryWt+GG lrnv vG+grrk gw1.4.1217.1 8 PDYHVACPRCKSNETKFCYYNNYNIKQPRFYCRDCCRYWTEGGMLRNVRVGSGRRK 63 677899*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-18 | 7 | 63 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.7E-28 | 11 | 63 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.192 | 12 | 63 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 14 | 50 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:1902455 | Biological Process | negative regulation of stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 63 aa Download sequence Send to blast |
KREQPPKPDY HVACPRCKSN ETKFCYYNNY NIKQPRFYCR DCCRYWTEGG MLRNVRVGSG 60 RRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00223 | DAP | Transfer from AT1G69570 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417524.1 | 2e-33 | predicted protein, partial | ||||
Refseq | XP_022838781.1 | 7e-30 | Zinc finger, Dof-type | ||||
Swissprot | O22967 | 8e-25 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | A0A090M012 | 2e-28 | A0A090M012_OSTTA; Zinc finger, Dof-type | ||||
TrEMBL | A0A454XNQ9 | 2e-28 | A0A454XNQ9_OSTTA; Dof domain, zinc finger-domain-containing protein | ||||
TrEMBL | A4RW53 | 4e-32 | A4RW53_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95817 | 7e-33 | (Ostreococcus 'lucimarinus') | ||||
STRING | A0A090M012 | 3e-29 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4655 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34140.1 | 3e-27 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|