PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.20.728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 16357.4 Da PI: 9.3329 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.9 | 1.6e-10 | 79 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+GV++++ +++A++ +p+ + + +lg f+++++Aa a++ a + +g gw1.20.728.1 79 SGYRGVTRHS-ESKYEARLGVPR----NSHLYLGLFDSPQKAAIAYDTALVQARG 128 89*****999.7*********83....5*******************99877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.01E-16 | 79 | 136 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-14 | 79 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-20 | 80 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.132 | 80 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 81 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-15 | 81 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 118 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
RQVYLGGHVE EEFAAEAFDI IVLKLSRMGD RSRTGSRPLK MNFPESRYAD LIDFIDSLTL 60 DELIMEVRRH SEGFARGASG YRGVTRHSES KYEARLGVPR NSHLYLGLFD SPQKAAIAYD 120 TALVQARGRR ASTNFPLHNY NNHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422573.1 | 4e-85 | predicted protein, partial | ||||
Refseq | XP_003083036.1 | 2e-83 | DNA-binding domain | ||||
TrEMBL | A0A2D8AM96 | 1e-99 | A0A2D8AM96_9EURY; Uncharacterized protein | ||||
STRING | ABP00890 | 1e-84 | (Ostreococcus 'lucimarinus') | ||||
STRING | Q00VW7 | 8e-83 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-25 | AP2 family protein |