PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.1.1488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | LSD | ||||||||
Protein Properties | Length: 169aa MW: 17595.9 Da PI: 8.4983 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.4 | 5.5e-14 | 1 | 23 | 3 | 25 |
zf-LSD1 3 gCrtlLsYPrGApsVRCalCdtV 25 gC+++L+YP+G+p+VRCalC++V gw1.1.1488.1 1 GCGAVLAYPTGSPYVRCALCNHV 23 9*********************9 PP | |||||||
2 | zf-LSD1 | 42.8 | 8.8e-14 | 38 | 62 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC +++++Pr+A++VRCalC tV gw1.1.1488.1 38 CEGCEVMMRFPRDATHVRCALCETV 62 ************************9 PP | |||||||
3 | zf-LSD1 | 33.8 | 5.6e-11 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr +L+Y +G+++VRCa C tV gw1.1.1488.1 84 CDGCRSMLAYAAGSTAVRCAACGTV 108 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06943 | 5.7E-10 | 1 | 23 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.7E-6 | 1 | 24 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.9E-9 | 36 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-9 | 38 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-7 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-9 | 84 | 109 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
GCGAVLAYPT GSPYVRCALC NHVTDTRATA TATESMRCEG CEVMMRFPRD ATHVRCALCE 60 TVSVNPRAAA SARHGGRDMA YARCDGCRSM LAYAAGSTAV RCAACGTVTR THSSETPAAA 120 ATSGGDTGRA RVQGARLTRE NLVVIENPPT VTANGKIRSN IAVGVKLDE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001415612.1 | 2e-45 | predicted protein | ||||
TrEMBL | A4RRQ7 | 3e-44 | A4RRQ7_OSTLU; Uncharacterized protein | ||||
STRING | ABO93904 | 6e-45 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 1e-23 | LSD family protein |