PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_9_#_57
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CAMTA
Protein Properties Length: 1066aa    MW: 117645 Da    PI: 6.8437
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_9_#_57genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1155.88.9e-49631793117
                    CG-1   3 ke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                             k+ k+rwl+n+e+++ L n+  + +++  e++ +p+ g+l L+nr++vr+frkDG++w+kkkdgktvrE+hekLKvg+ve+l+cyY+
  fgenesh1_pm.chr_9_#_57  63 KNaKTRWLRNTEVCDALLNYVAYGFEAsaEAPMKPRAGTLYLINRRVVRFFRKDGHNWQKKKDGKTVRETHEKLKVGTVELLNCYYT 149
                             4449****************99988776799******************************************************** PP

                    CG-1  87 hseenptfqrrcywlLeeelekivlvhylev 117
                             h e++p fqrrcywlL+++ e  vlvhyl v
  fgenesh1_pm.chr_9_#_57 150 HCEDDPRFQRRCYWLLNMD-EGAVLVHYLRV 179
                             *******************.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.42358185IPR005559CG-1 DNA-binding domain
SMARTSM010766.2E-4961180IPR005559CG-1 DNA-binding domain
PfamPF038594.5E-4465178IPR005559CG-1 DNA-binding domain
CDDcd001029.53E-7461549No hitNo description
SuperFamilySSF812963.08E-15462548IPR014756Immunoglobulin E-set
PfamPF018331.0E-7462547IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.0E-7462550IPR013783Immunoglobulin-like fold
PfamPF127962.2E-7715792IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-14724824IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-15726828IPR020683Ankyrin repeat-containing domain
CDDcd002045.83E-14728822No hitNo description
PROSITE profilePS5029714.796733798IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003766795IPR002110Ankyrin repeat
PROSITE profilePS500889.912766798IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MDRARSSTRK VGIGSMDDEV DADVGTAPAR RGRARGAEGR NGGDGLDGVA DAATRTRAAD  60
IVKNAKTRWL RNTEVCDALL NYVAYGFEAS AEAPMKPRAG TLYLINRRVV RFFRKDGHNW  120
QKKKDGKTVR ETHEKLKVGT VELLNCYYTH CEDDPRFQRR CYWLLNMDEG AVLVHYLRVK  180
QHPARALAAG SAAYAAYAAA MNRKSKGGVV KGAGTKRTTA AGASRSGKSG REQGLTASIH  240
DGEYTAVTRR NVNEMLQRDD EDLAQIFHET GLDEGDGVWS SIFDPDSSAD ADGPTTSLSQ  300
LMREFSNIDE NVDDAHSGRR HLSSYEDRES PANDDGPVLS LEELERRIER IREQWQGSLS  360
TDKDSQSIKT IDSQMRSLQE DVDRAVEASR RRAATNTPSD ELSGEPSERA TPVATDDLSG  420
QGVSPDANGA DNDDVCVIER PPSRIFRQIP ATPSGVHILW SIIDFTPSWD DITGGAKVII  480
TGNPLVEFDQ EIDMCCVFGT KSVSIERLAP NVLKCEVPPH PPGRVSMFLA MDNGNGHPVS  540
EMCSFEYVDS AVARSQKNLF ASKPVDPSAE MSDRDFQMRL VQLLTTIGSD SSEMSNGKSG  600
EGTAGSQLMN LYDSVSRSTM HMNALSALRA AERLQIDPYN MDNIKDEDLM VLLNGMIQAR  660
LKSVIVHENR RTKARLAVPT AATAVNELEE VAKVANVAED DVVGEVVERT QETHKTLMKL  720
ALAPSAYNRN DREGLTLFHC CAALGIEWAV RAMCATGIDL NHADKHKRTA LHWAVARGHE  780
MVVATLLNYG AKSRAVAMWD GHMFGPAELA IHCGYEGIAA YISEANLTSA LDSINLRTNR  840
TSRAPNVSAT THQFRRTMLP SDSDNSDSEG VSFSKSRPRR KATRSMLSSK ARVRELQVEG  900
SDDSETEAAT IVKRAEHARE CLLKTLRELN VKPEYVDAQL HAKLGKRRVR RMKEGEMQNL  960
MSELLTPVGE EPINTQKLTR RPVMRARRLP KGKATQARPK RIEETKETGS SDDDDEEAIQ  1020
KNFVRIQSSL QSSAARAQYL RLRRSTHQLR TELRALATAS FSDDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1876880RPRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420194.10.0predicted protein
TrEMBLA4S4200.0A4S420_OSTLU; Uncharacterized protein
STRINGABO984870.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.24e-40ethylene induced calmodulin binding protein